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multireg.hh
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1/* -*- mia-c++ -*-
2 *
3 * This file is part of MIA - a toolbox for medical image analysis
4 * Copyright (c) Leipzig, Madrid 1999-2017 Gert Wollny
5 *
6 * MIA is free software; you can redistribute it and/or modify
7 * it under the terms of the GNU General Public License as published by
8 * the Free Software Foundation; either version 3 of the License, or
9 * (at your option) any later version.
10 *
11 * This program is distributed in the hope that it will be useful,
12 * but WITHOUT ANY WARRANTY; without even the implied warranty of
13 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14 * GNU General Public License for more details.
15 *
16 * You should have received a copy of the GNU General Public License
17 * along with MIA; if not, see <http://www.gnu.org/licenses/>.
18 *
19 */
20
21#ifndef mia_3d_multireg_hh
22#define mia_3d_multireg_hh
23
24#include <mia/3d/model.hh>
25#include <mia/3d/timestep.hh>
26#include <mia/3d/deformer.hh>
27#include <mia/3d/fatcost.hh>
28#include <mia/3d/transform.hh>
29
31
36typedef std::shared_ptr<C3DFVectorfield > P3DFVectorfield;
37
47{
48public:
60 C3DMultiImageRegister(size_t start_size, size_t max_iter,
61 C3DRegModel& model, C3DRegTimeStep& time_step,
62 float outer_epsilon);
63
70 P3DTransformation operator () (C3DImageFatCostList& cost, P3DInterpolatorFactory ipf);
71private:
72 void reg_level(C3DImageFatCostList& cost, C3DGridTransformation& result, const C3DInterpolatorFactory& ipf);
73 void reg_level_regrid(C3DImageFatCostList& cost, C3DGridTransformation& result, const C3DInterpolatorFactory& ipf);
74
75 size_t m_start_size;
76 size_t m_max_iter;
77 C3DRegModel& m_model;
78 C3DRegTimeStep& m_time_step;
79 float m_outer_epsilon;
80};
81
82
84
85#endif
std::shared_ptr< C3DInterpolatorFactory > P3DInterpolatorFactory
Pointer type of the 3D interpolation factory.
A factory to create interpolators of a given type by providing input data.
A 3D non-rigid image registration class.
Definition multireg.hh:47
C3DMultiImageRegister(size_t start_size, size_t max_iter, C3DRegModel &model, C3DRegTimeStep &time_step, float outer_epsilon)
The time-step part of time-marching registration algorithms.
#define EXPORT_3D
Definition defines3d.hh:45
#define NS_MIA_BEGIN
conveniance define to start the mia namespace
Definition defines.hh:33
#define NS_MIA_END
conveniance define to end the mia namespace
Definition defines.hh:36
std::shared_ptr< C3DFVectorfield > P3DFVectorfield
pointer type for a 3D vector field
Definition multireg.hh:36
std::shared_ptr< C3DTransformation > P3DTransformation
pointer type for a 3D transformation